Overview

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This is the home of the documentation for pyDiffMap, an open-source project to develop a robust and accessible diffusion map code for public use. Our documentation is currently under construction, please bear with us.

  • Free software: MIT License.

Installation

Pydiffmap is installable using pip. You can install it using the command

pip install pyDiffMap

You can also install the package directly from the source directly by downloading the package from github and running the command below, optionally with the “-e” flag for an editable install.

pip install [source_directory]

Development

To run the all tests run:

tox

Note, to combine the coverage data from all the tox environments run:

Windows 
set PYTEST_ADDOPTS=--cov-append
tox
Other 
PYTEST_ADDOPTS=--cov-append tox

If you don’t have tox installed, you can also run the python tests directly with

pytest